« Previous
Next »
Journal of Endodontics
Volume 36, Issue 2
, Pages 179-189
, February 2010
High-throughput Gene and Protein Expression Analysis in Pulp Biologic Research: Review
References
- . A comparison of selected mRNA and protein abundances in human liver. Electrophoresis. 1997;18:533–537
- . Regeneration potential of the young permanent tooth: what does the future hold?. Pediatr Dent. 2008;30:253–260
- . Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 1995;270:467–470
- Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol. 1996;14:1675–1680
- A novel approach for high-quality microarray processing using third-dye array visualization technology. IEEE Trans Nanobioscience. 2003;2:193–201
- Comprehensive quality control utilizing the prehybridization third-dye image leads to accurate gene expression measurements by cDNA microarrays. BMC Bioinformatics. 2006;7:378
- Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci U S A. 2004;101:9309–9314
- . A gene-coexpression network for global discovery of conserved genetic modules. Science. 2003;302:249–255
- Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. Genome Biol. 2008;9:R139
- Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet. 2001;29:365–371
- The MicroArray quality control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol. 2006;24:1151–1161
- Evaluation of DNA microarray results with quantitative gene expression platforms. Nat Biotechnol. 2006;24:1115–1122
- . Comparative gene expression profile analysis between native human odontoblasts and pulp tissue. Int Endod J. 2008;41:117–127
- . Effects of pooling mRNA in microarray class comparisons. Bioinformatics. 2004;20:3318–3325
- . On the utility of pooling biological samples in microarray experiments. Proc Natl Acad Sci U S A. 2005;102:4252–4257
- . Biases induced by pooling samples in microarray experiments. Bioinformatics. 2007;23:i313–i318
- . Effects of TGF-beta1 on interleukin profile of human dental pulp and odontoblasts. Cytokine. 2007;40:44–51
- . Serial analysis of gene expression. Science. 1995;270:484–487
- Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays. Nat Biotechnol. 2000;18:630–634
- . Advances in functional protein microarray technology. FEBS J. 2005;272:5400–5411
- . High resolution two-dimensional electrophoresis of basic as well as acidic proteins. Cell. 1977;12:1133–1141
- . Proteomics. Annu Rev Biochem. 2003;72:783–812
- . Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2001;2:RESEARCH0004
- . The application of protein microarrays to serum diagnostics: prostate cancer as a test case. Dis Markers. 2001;17:225–234
- . BIA/MS: interfacing biomolecular interaction analysis with mass spectrometry. Anal Biochem. 1997;244:124–132
- . Surface plasmon resonance: towards an understanding of the mechanisms of biological molecular recognition. Curr Opin Chem Biol. 2001;5:572–577
- . Improved sensitivity of biomolecular interaction analysis mass spectrometry for the identification of interacting molecules. Proteomics. 2003;3:402–412
- . Perivascular niche of postnatal mesenchymal stem cells in human bone marrow and dental pulp. J Bone Miner Res. 2003;18:696–704
- Stem cell properties of human dental pulp stem cells. J Dent Res. 2002;81:531–535
- . Postnatal human dental pulp stem cells (DPSCs) in vitro and in vivo. Proc Natl Acad Sci U S A. 2000;97:13625–13630
- . Odontoblast differentiation of human dental pulp cells in explant cultures. Calcif Tissue Int. 2000;66:129–138
- . Human dentin production in vitro. Exp Cell Res. 2000;258:33–41
- . In vitro differentiation and mineralization of human dental pulp cells induced by dentin extract. In Vitro Cell Dev Biol Anim. 2005;41:232–238
- . Matrix and TGF-beta-related gene expression during human dental pulp stem cell (DPSC) mineralization. In Vitro Cell Dev Biol Anim. 2007;43:120–128
- Simvastatin induces the odontogenic differentiation of human dental pulp stem cells in vitro and in vivo. J Endod. 2009;35:367–372
- Odontoblast cells immortalized by telomerase produce mineralized dentin-like tissue both in vitro and in vivo. J Biol Chem. 2002;277:19976–19981
- . Temperature sensitive simian virus 40 large T antigen immortalization of murine odontoblast cell cultures: establishment of clonal odontoblast cell line. Connect Tissue Res. 1995;33:97–103
- . Dentin-specific proteins in MDPC-23 cell line. Eur J Oral Sci. 1998;106(Suppl 1):260–266
- . Cluster analysis and gene expression profiles: a cDNA microarray system-based comparison between human dental pulp stem cells (hDPSCs) and human mesenchymal stem cells (hMSCs) for tissue engineering cell therapy. Biomaterials. 2006;27:3766–3781
- . Comparison of human dental pulp and bone marrow stromal stem cells by cDNA microarray analysis. Bone. 2001;29:532–539
- . Activation of the FGF signaling pathway and subsequent induction of mesenchymal stem cell differentiation by inorganic polyphosphate. Int J Biol Sci. 2008;4:37–47
- STRO-1 selected rat dental pulp stem cells transfected with adenoviral-mediated human bone morphogenetic protein 2 gene show enhanced odontogenic differentiation. Tissue Eng. 2007;13:2803–2812
- . Characterization and gene expression of high conductance calcium-activated potassium channels displaying mechanosensitivity in human odontoblasts. J Biol Chem. 2000;275:25556–25561
- General expression profiles of human native odontoblasts and pulp-derived cultured odontoblast-like cells are similar but reveal differential neuropeptide expression levels. Arch Oral Biol. 2009;54:55–62
- . Odontoblast primary cilia: facts and hypotheses. Cell Biol Int. 2004;28:93–99
- Mesenchymal stem cell-mediated functional tooth regeneration in swine. PLoS One. 2006;1:e79
- . The hidden treasure in apical papilla: the potential role in pulp/dentin regeneration and bioroot engineering. J Endod. 2008;34:645–651
- . Gene expression profiling of pulpal tissue reveals the molecular complexity of dental caries. Biochim Biophys Acta. 2005;1741:271–281
- . Analysis of gene and protein expression in healthy and carious tooth pulp with cDNA microarray and two-dimensional gel electrophoresis. Eur J Oral Sci. 2005;113:369–379
- . Notch signaling: cell fate control and signal integration in development. Science. 1999;284:770–776
- . JAGGED2: a putative notch ligand expressed in the apical ectodermal ridge and in sites of epithelial-mesenchymal interactions. Mech Dev. 1997;69:203–207
- . Delta-notch signaling in odontogenesis: correlation with cytodifferentiation and evidence for feedback regulation. Dev Biol. 1998;204:420–431
- . Reactivation of delta-notch signaling after injury: complementary expression patterns of ligand and receptor in dental pulp. Exp Cell Res. 1999;246:312–318
- . Notch2 protein distribution in human teeth under normal and pathological conditions. Exp Cell Res. 2003;282:101–109
- Molecular characterization of young and mature odontoblasts. Bone. 2009;45:693–703
- Microarray evaluation of age-related changes in human dental pulp. J Endod. 2009;35:1211–1217
- . Gene expression in a pure population of odontoblasts isolated by laser-capture microdissection. J Dent Res. 2001;80:1963–1967
- . Analysis of odontoblast gene expression using a novel approach, laser capture microdissection. Connect Tissue Res. 2002;43:376–380
- Microarray expression profiling of human dental pulp from single subject. Clin Invest Med. 2008;31:E55–E61
- Altered gene expression in human cleidocranial dysplasia dental pulp cells. Arch Oral Biol. 2005;50:227–236
- Lipoteichoic acid increases TLR and functional chemokine expression while reducing dentin formation in in vitro differentiated human odontoblasts. J Immunol. 2006;176:2880–2887
- Different roles of odontoblasts and fibroblasts in immunity. J Dent Res. 2008;87:256–261
- Detection of dentin sialoprotein in rat periodontium. Eur J Oral Sci. 2004;112:163–170
- The expression of dentin sialophosphoprotein gene in bone. J Dent Res. 2002;81:392–394
- Dentinogenesis imperfecta 1 with or without progressive hearing loss is associated with distinct mutations in DSPP. Nat Genet. 2001;27:201–204
- . HUGO (FNDC3A): a new gene overexpressed in human odontoblasts. J Dent Res. 2008;87:131–136
- Immortalization and characterization of human dental pulp cells with odontoblastic differentiation. Arch Oral Biol. 2007;52:727–731
- . A substractive PCR-based cDNA library from human odontoblast cells: identification of novel genes expressed in tooth forming cells. Matrix Biol. 2000;19:421–430
- . Isolation and partial sequencing of potentially odontoblast-specific/enriched rat cDNA clones obtained by suppression subtractive hybridization. Arch Oral Biol. 2001;46:249–260
- Identification of differentially expressed cDNA transcripts from a rat odontoblast cell line. Bone. 2005;37:578–588
- Differentially expressed protein profile of human dental pulp cells in the early process of odontoblast-like differentiation in vitro. J Endod. 2008;34:1077–1084
- . Chitosan monomer promotes tissue regeneration on dental pulp wounds. J Biomed Mater Res A. 2006;76:711–720
- Characterization of dental pulp stem cells of human tooth germs. J Dent Res. 2008;87:676–681
- Pääkkönen V. Expression profiling of human pulp tissue and odontoblasts in vivo and in vitro. University of Oulu, Oulu, Finland: Acta Universitatis Ouluensis, 2009. Available at: http://herkules.oulu.fi/isbn9789514290053/isbn9789514290053.pdf. Accessed October 2009.
- Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci U S A. 1996;93:6025–6030
PII: S0099-2399(09)00890-5
doi: 10.1016/j.joen.2009.10.016
© 2010 American Association of Endodontists. Published by Elsevier Inc. All rights reserved.
« Previous
Next »
Journal of Endodontics
Volume 36, Issue 2
, Pages 179-189
, February 2010
